Clowns can change color depending on their host in nature - and I have found that they can change color (lighten) when kept under less intense lighting in captivity. Once a friend of mine and I split a hatch of clowns - I kept about a dozen in a reef tank under metal halides, and he kept some under florescents. After a couple of months we got back together and compared fish and mine were noticeably darker with much more developed black. It's not 100% proof that lighting is the cause, but it is something to consider.