I have been doing a ton of reading on subjects that feed into the duplex sump system/benthic filtration that started by Steve Tyree's idea and were modified with Mr.Wilson's duplex sump idea. I find it funny that after doing a lot of reading and thinking, I was beginning to come up with my own ideas that were right in line with those of the people listed above. Except these guys obviously beat me to it by several years...
I have a ton of ideas and questions that I'd like to throw into the discussion, but I'll break it down into a couple of post.
Overall, I think the duplex sump idea is a great idea. I'm a firm believer in nature's ability to solve our issues in the hobby. However, has anyone experimented in detail with removing the protein skimmer?
Taking the following articles/research into consideration, here are some major conclusions I've come up with regarding protein skimmers:
1) Protein skimmers remove mostly inorganic materials from the water, mostly calcium carbonate and silicone dioxide.
http://www.advancedaquarist.com/2010/2/aafeature#
2) Protein skimmers have been shown to selectively remove certain strains of bacteria from aquaria while leaving other untouched, creating an unnatural selection/imbalance situation.
http://www.advancedaquarist.com/2011/3/aafeature#
3) Protein skimmers decimate zooplankton populations (This is a generalization on my part and I might be wrong with this assumption. Please correct me if I'm wrong. Have nothing to support this statement.)
4) at most, protein skimmers have been shown to reduce TOC by 30-35%. It has been theorized (but not proven) that the majority of the skimmate is actually the cell structures of the bacteria that the skimmer removes (i.e. silicone dioxide and calcium carbonate could be present in the outer membranes of the cells and the various organic compounds present in the skimmate could be the "guts" of the bacteria removed.
http://www.advancedaquarist.com/2010/1/aafeature# and the article referenced in bullet 2.
5) "Natural reef" water has been shown to have bacteria populations roughly 10x those of heavily skimmer and filtered aquaria. Additionally, TOC levels on reefs are typically around 1.2-1.4 ppm while many of our aquaria are around .7 ppm or so (I know this is a big generalization)
http://www.advancedaquarist.com/2011/3/aafeature#
I currently don't have a tank set up, but I'm in the process of researching and planning my next tank. I'm leaning towards setting up a tremendously large cryptic sump with an oversized planted refugium and deep sand bed. Ideally I'd like to set something up with roughly 20% of the total water volume is the display tank and the remaining 80% of the water volume is eaten up by my sump, but that is a discussion for a future post! However, I believe firmly in the removal of a protein skimmer from my system (provided that the sump/natural filtration area is sufficiently large enough).
Overall, I believe that removing the protein skimmer would be key to replicating a "natural reef" as closely as possible. Any thoughts on this?