Here is a link to my Apex Tunze programming. It will explain the use of profiles and how to incorporate them into the variable speed outlets.
http://www.reefcentral.com/forums/showthread.php?t=1994312
You can use those profiles but don't enable divide by 10 in the profile and change the on time and off time to your desired intervals.
Here is a quick profile example that should accomplish what you may be after:
Surge_1
Synchronize Disabled
Divide by 10 Disabled
Initial off time (Seconds) 0
On time (Seconds) 1800
Off time (Seconds) 1800
Minimum intensity 30
Maximum intensity 100
The above profile will ramp the pump from 30% power to 100% power every 30 minutes. It will also remain at each setting for 30 minutes. The On time is the time it spends at Maximum intensity and the Off time is the time spent at minimum intensity. Initial Off time is useful if you have multiple pumps and want to stagger their on/off times. Synchronize will sync multiple pumps.