This is just how I would do it....
I would raise the closed loop's intake bulkhead. It will need cleaning, and down behind all your rocks makes it pretty hard to even notice (makes it easier to suck in falling sand though!). I like to put those about 6" below the surface, and in a corner if you can...the glass is much stronger if holes are put in the corners rather than in the center. FWIW, you could also spread out those CL outlets...no need to have them so close.
Then, for the two sump returns... IMO, its better to run almost all your flow through the closed loop (more gph per watt because of no head loss), and use a smaller sump return. So, run the closed loop with 3 or 4 outlets, and the sump return with one. Make the CL pump larger to compensate, and make the sump return about 300-400gph only. This will do something else as well...
Run your overflows into the skimmer directly...then have your skimmer overflow into the sump. Get rid of the downdraft/beckett skimmer (outdated energy hog) and use a recirculating needlewheel skimmer for this. Examples include...Euroreef RC series, Deltec, H&S, and Aqua Medic 5000 series (oooh, a 5000 baby or 5000 shorty2 would be my picks).
With a lower flow through the sump, you can eliminate one of the overflows as well and use it for something more useful...like rock and corals.
http://reefcentral.com/forums/showthread.php?s=&threadid=550482&perpage=25&pagenumber=1
There, with those things, I eliminated one large pump, shrunk another down a couple hundred watts, increased your skimmer performance, eliminated an overflow, lowered the heat from pumps, and increased the flow in the main tank by a good percentage.