I prefer to scrape it off my back glass. That being said, I don't do it terribly often because it is a pain in the butt reaching around the rock, scraping, dodging my clown fish's teeth, and dodging my tang's spur.
As far as coraline helping your tank, I don't really see how it could. Maybe it sucks up a bit of nitrate and phosphate, but I doubt it's much. As far as being a water quality indicator, you will have plenty growing on your rock. Plus a while back when my RO/DI filter wasn't working right without my knowledge (always use a TDS meter) my corals were STNing like crazy, but my coraline was fine.