Yeah, the use of GFO is not recommended in Zeo tanks because you are trying to build up the densities of "Zeo biomass" (bacteria) which need the PO4 in their foodchain. Sof the bacteria dosed via the Zeobac are PO4 consumers. So if you use GFO you will slow down the build up of the kind of bac you want for future PO4 consumption.
It is fine to put a small container of GFO underneath the effluent drip from your Ca Rx though, since this can be a source of excess PO4 in the system. I have done that in the past. It's also fine to put filter socks on your drain pipes for those times when you've overfed or plan to storm the tank and you don't want the wastes to degrade in your tank. You just remove the socks after a day or two.
All of the above is the 'by the book' Zeovit protocol. On the other hand, I have known the odd Zeo user who also used GFO. According to them, it didn't cause any harm. But the risk is that you will reduce PO4 too rapidly this way, causing the inevitable "negative coral consequences." My own experience is that when I took my 4 months off Zeovit, I put in a package of Elos PO4 absorber, in a mesh bag in my sump. I used the entire box because that is the amount recommended for my water volume. I definitely saw coral stress after doing this and if I remember right I lost a few afterwards. So in the future I will only add a small cup of GFO under the Ca Rx effluent....
Here is my .02 on the worse case scenario of taking the plunge and removing your GFO when you start Zeovit (I'm not experienced with other carbon dosing regimens so I won't venture to comment.) It's possible to have a bumpy ride as your nutrients gradually balance out and reduce. If you've had GFO online and you remove it, there can be a period of time where the PO4 rises a little. You may get a bit of algae on your rocks (add more herbivores/detrivores). You may even get a diatom bloom or a cyano bloom on the sandbed if these have been harboring PO4. But these things pass you just have to ride it out. Some people never have it happen but the tanks with PO4 that has precipitated out of their water into their rocks and sand can have it happen. As the PO4/NO3 in the water colum decreases, it can them come out of the rocks and more little algae blooms can occur. So patience is important as it can take up to 6-9 months to get it all out. It did for me when I first started, 2 1/2 years ago. But my corals looked great and grew well. I had large colonies, very colorful. I'm speaking in past tense because things went wrong for me last spring and I lost a whole lot of corals over the next 8 months. I think I slacked off on water testing and my chemistry got out of balance. I know I didn't test Mg for months (it was 900 when I finally tested), and I didn't test PO4 for months either...bad, bad, bad
well, that was a long post!