Ummm...I guess I don't quite understand the question?
Are you putting in a deep sand bed (several inches)? If thats the case, I have seen people build racks from PVC or acrylic rods to lift the rocks up. Otherwise, if you are putting in say 5" of sand, you are covering 5" of costly rock.
I only use a inch or so of sand, striclty for looks. So I just put down the rock right on the glass, and filled aorund it with sand.