The worst advice I've ever gotten while keeping a reef was to never disturb the sandbed. I keep mine at 1" and stir/vacuum it once a week with water changes. Things seem much happier when I get rid of all the detritus piled up.
For a shallow sandbed you're exactly correct. However, for a functioning deep sand bed you do not want to, nor should you really have to disturb it, siphon it, etc. Keeping the bed inoculated with life and protecting that micro and macro fauna by not adding certain types of fish and inverts will keep you from having the need to do any of that.