Well, I spent another $200 dollars on PVC and plumming equipment, re-plumming what was not really done well in the first place. The refugium and add on refugium were not plummed in to the system and the Hammerhead was overpowering the overflows, furthermore, the durso's were constructed wrong (they were made out of 1 inch PVC). The return lines were 3/4 inch spa flex tubing that was causing even further back pressure heating up the pump. The pump is exceptionally cooler now!
Finally, the skimmer wasn't hooked up. Since the pump was so strong, I wanted to feed the skimmer with the pump and throttle back on the lines to the returns, effectivly shunting the rest of the water thru the skimmer. This way, I could open up the throttle (since the sequence hammerhead isn't really made for back pressure) and open up the ballvalve right out of the pump.
One of the neat things about the design is that there is a ball valve to shut off the flow to the skimmer to clean it. There is also a ball valve back into the sump that can be open to recirculate the water when the skimmer is off so the overflows do not become overloaded. It will be a fine tune game with so many ball valves!
After an all day event, I have everything up and running. David Derek (Trigger Systems CEO and guru engineer) spent his whole day with me helping plan and plump. Actually, truth be known, I did most of the helping, he did most of the work!

Here are some picutures of the sump and skimmer and it's replumming.
Here is a picture of the new manifold with the returns. The returns are further split to feed both sections of the refugium.
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Here is a shot of the length of the plumming. You can see the blur of the white tubbing in the front of the picture as it dives into the fuge.
<img src="http://i8.photobucket.com/albums/a12/ryanreeves/P8280009.jpg" alt="Image hosted by Photobucket.com">
And finally, here is the new and updated modified sump set up with skimmer!
<img src="http://i8.photobucket.com/albums/a12/ryanreeves/P8280010.jpg" alt="Image hosted by Photobucket.com">