* How can we be scientific about ATS and provide empirical data to draw the correct conclusions?
Test water before and after. Religiously document conditions prior to installing scrubber, including filtration methods, keep maintenance logs, take many pictures, monitor feeding, etc. Not many people do this. Usually they just test right before and then after.
* For what kind of tanks can an ATS be beneficial or dangerous?
Beneficial for all tanks, not dangerous really in any way I can think of, just not ideal for FW planted tanks - you need to find a balance point so that the scrubber doesn't out compete the plants. It has been done, but not by many
* Light sources - can LED be more than experimental for ATS?
LED is not really what I consider experimental anymore. It grows pretty much nothing but green hair under almost any condition from what I have seen, and it by far and above the best method. 660nm Red and 455nm Blue in a 6:1 ratio is currently what is suggested. Some use warm or neutral white, but I am of the opinion that 660/455 is all you need.
* Skimmers in cooperation with scrubbers - Advantages and disadvantages.
They don't do the same thing, so you can use them together. Most report lighter or less production of skimmate in conjuntion with a scrubber
* Scrubbers and carbon dosing - Competition or cooperation?
Carbon dosing is on the opposite spectrum from algae scrubbers. It will generally compete with the scrubber. This applies to any kind of carbon dosing - biopellets, vodka, vinegar, etc. Again, you can find a balance point, and some have done so.
* Approaches to achieve 3D-scrubbing in both open and closed designs
3D is generally only accomplished with a closed box design, however wrapping the entire screen in Saran Wrap will aid a open scrubber in attaining more 3D-like growth (and you can also move the lights closer without burning algae, some have reported)
* Ozone and UV combined with an ATS - good or bad?
No competition AFAIK on UV. Not sure on Ozone but I don't think it can hurt.
* Effects on livestock - Good and bad
some have reported specific corals not responding well, for me that is frogspawn and branching hammers. However this may be because my screen is oversized and not growing green algae well (rebuilding it so that it's sized for feeding, not tank volume)
* Long term usage of an ATS and how to collect data about it?
See the response to the first question
* How to avoid crashes - what are the safeguards?
Algae scrubbers don't cause tank crashes. You may find one or two people saying they did but then when you poke and prod them for answers, you either don't get any or find out something else that points to a larger problem. It has been widely theorized (though to my knowledge not proven) that buildup of heavy metals is the main culprit in tank crashes (long term), and algae does absorb heavy metals, however how much and how fast and how efficient algae is at keeping heavy metals at a reduced level over the long term has not been evaluated to my knowledge. This is mainly because there's no money in algae - no profit or advantage in testing many of these things. It will just take someone with curiosity and a lab and lots of disposable cash to go down this road I think.
ALSO, would it be okay to put the harvest from an ATS into my compost bin for my garden? Kinda random but curious about this.
Yes. You probably want to rinse out the saltwater first, but maybe not.
You're welcome!