I have an EV-1000 with a MAG and I can't believe how much junk it pulls out. It's a crap magnet!
I have determined that the best thing you can do is ensure that there is no back pressure on the output of the skimmer. (Where the gate valve is)
You mentioned that when you sump level fluctuates that you get variable skimming, this is due to back pressure, which will effect the skimming column.
If it is possible to lift your skimmer a couple of inches above your water level, you will get more consistent skimming output.
You may need a more powerful pump, too.