Brett,
I don't know but it seems changes in organics and levels may play a role. Perhaps when they break down they release a trace element , minor element , heavy metal , that gives dinos an edge or maybe it's the localized acidic conditions brought on by decay . Maybe it has nothing to do with organics at all ;but I suspect it might in some cases anyway.
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I've used dry rock : a substantial amount is flourishing in my system ;never got dinos from it. Wouldn't hesitate to use it again after curing. Many tanks without that type of rock do get them. The "dead"/dry rock will shortly develop ammonia oxidzing bacteria,ie nitrifiers and then denitrifiers. I doubt any other bacteria are playing a significant role in a reef tank but I suppose they might but I can't imagine what that would be..