My siphon line is too high in the overflow. Just made some poor calculations here. I can switch to slip bulkheads and reduce the height significantly.
I don't think you need to switch bulkheads, but you could. this falls under the variant design (external box, bottom bulkheads). Should we start calling it that?
So you could friction fit a P trap into the thread/slip fitting and reduce the height a little, but not much. With the external box you don't need the cap for cleaning access, you can just remove the plumbing part (For reference, 3 years and I haven't had to do this yet).
What you could do is cut the slip side of the fitting down bit so that the double-elbow can be lower in the box. Again it doesn't have to be water-tight but does need to be air tight (so seal with TFE paste is fine) because the siphon line can pull air in through a loose joint (resulting in air in the sump outlet, not a big deal, just an annoyance)
Or, you could change the BH to slip on flange and friction fit everything in.
The gate valve for the 2nd drain is full open - I only adjust the main siphon. I realize now that I did not need the extra gate valve, but whatcha gonna do
You only need a gate valve on the siphon line, no where else. And the gate valve should be as close to the outlet/sump as you can possibly get it. Otherwise the air in the line below the gate valve can take a long time to purge, it will be noisy, and it might even shake quite a bit as the air tries to rise in the pipe against the falling water.
My latest trick - which works fantastic if you are using 1.5" pipe, is a single-union ball valve from Lowes. 100% plastic (no metal screw) Best part, it's less than $10.
http://www.lowes.com/pd_146171-185-024+LBVUS-112_0__?productId=3130791
This one has a nut on one side that works just like the internal nut on a dual-union $40 valve like you get at BRS. The difference is that the nut both tightens down on the ball, and serves as the means to take apart the device. This valve is completely useless in any other application except maybe hot tubs from what I understand, because you can't shut it off and then disconnect it with water on the other side - the ball slides out when you take it apart. BUT - we don't need it for that! We just need fine control and the ability to lock it down. So you set it up nut-down and submerge the bottom outlet (which sticks out 1/2" or so) and loosen the nut. Start things up, adjust the ball (which spins freely) then tighten the nut when you get it tuned, and it won't budge at all. If you ever need to fine-tune it, loosen it a good amount, make your adjustment, then tighten it down again.
The main siphon line runs straight into the sump. It is submerged about 2 inches. I realize that 1/2" is optimal (just did not pull it yet). Could this be the culprit?
Yes, that is a problem. 1" max under the surface. Any more and the air can't easily purge out of the line