Well I'm not sure it's dinoflagellates or if it's a bacterial bloom or cyano bacteria? How well is your skimmer working?
I've never heard of dinos being associated with vinegar dosing but I suppose it could be. As specualtion, the vinegar if dosed all at once will dramatically lower ph short term as it brings in quantities of CO2 and dinos need CO2 . Either vodka or vinegar will lower it a bit long term but vodka does not have the precipitous short term effect and can be dosed all at once. The ph drop might help dinos which wane when ph slips out of their range of tolerance as they may be unable to control their internal ph very well compared t other organisms other organisms according to a number of reports. Couldn't say this is the problem though. Perhaps the dinos like the acetate . Many are using vinegar without any reports of dinos as an outcome of which I am aware and plenty of aquairums get them without vinegar dosing.
This article by Randy Farley has more:
http://reefkeeping.com/issues/2006-11/rhf/index.php