Jim,
the possibility that PO4 is stored in the rocks is very real. How old are they? I have some that are over 8 years old and they have definitely stored away some nutrients during various experiments. I have them pretty much under control at the moment, but there are occaisional burst of nutrients. Also, to paint the picture a bit clearer, I had to go away for a few months and the tank crashed in other hands. This led to a great deal of excess nutrient in the set-up. My solution was to use massive carbon dosing to attack the stored wastes. I wouldn't recommend this if sensitive corals are present. When I came back the only surviving coral was an Echinophyllia. It is still hanging in and in full recovery after some months of dosing acetic acid/ethanol mix (which is a super version of vodka/vinegar). Now, I did experience just about the same thing as you. The algae died off, but the remains did not seem to want to go away. There were occaisional spurts of algae growth, but it consistenly died away. The system was functioning, but not finished and stabile.
One question that came to mind was the Redfield ratios, which are based on the typical consumption of carbon-nitrogen-phosphorus on a reef. For every phosphorus atom one needs 16 nitrogen and 106 carbon to assimilate the waste products. So is the typical ratio. This is why carbon dosing works. Most aquariums are carbon limited (severely in most cases). This leads to the thought that, when the nitrogen is used up, but not the PO4, then we may need to dose a bit of nitrogen as well. Sounds strange, but this can work. Nitrogen limiting can stall PO4 assimilation, especially when it is stored in the rock and sand.
Now, many algaes and cyanobacteria can fix nitrogen direct from the air, which is a bit of a problem. We cannot change this fact. However, if we manage to reduce the PO4 to such a level that they cannot live, then we have one the first stretch.
As you have not used the zeolith reactor for a while, you have definitely built-up some nutrients in the rocks. This will go away, slowly, if you simply follow the current dosing. Although I am not impressed with the Elos PO4 test kit (I recommend the expensive one from Rowa), I think you have the main part of your wastes under control. I would simply sit back and wait a bit and not dose any anti-algae stuff or use GFO. Stay with the basic 3 (zeolith-zeostart2-zeobac) plus some of the others dosed non-daily in rotation. From the dosages, I take it you have about 250 gals/400l netto.
Now, the flow rate through your zeolith should be 100gal/400l per hour through 1 litre/liko of zeolith. More will strip the tank too quickly of nutrients.
As a general guide line, do not make rash, quick changes in the tank. Slow change allows the system to follow your strategy, so to speak. Simply disconnecting a filter typically leads to further mishaps, as an important part of the system has ben removed. Too rapid of an increase/decrease in carbon may collapse the system. Also, rmember that bacteria will strip the water column of waste AND oxygen, which is where many beginners make a mistake. Increasing the carbon too quickly will lead to a bacterial explosion and anoxia.
As the tank seems to be on the right road in general, you may want to add a few more corals to get things more alive. They will use some of the waste product for their metabolism, as well as benefit from the bio-film from the reactor. Also, the colour of the corals will get paler as their are fewer nutrient to feed the zooxanthellae. This is normal. The colours are actually masked by the zooxanthellae. Aminos and bio-film typically will improve the colouring in time.
Hope this helps,
Jamie