Are Deep Sand Beds, DSBs, dangerous to use in a marine aquarium?

how is this irrelevant? i hear it all of the time that "refugiums" and the DSB act like sewage treatment plants. which they do, but not in the way they are reported. they imply that it is a way to make nutrients just disappear.

I haven't seen anyone (other than yourself) imply that DSB's and refugiums simply (and magically) make nutrients just up and disappear. We have talked about nutrient recycling and nutrient removal via export such as harvesting algae that is sucking up the fertilizer, along with such things as skimmers, gfo, etc.


can we recreate the reefs even better if we would stop trying to setup all of our recreated reefs the same and start paying more attention to the environment that the organisms come from? if one wanted to grow sea grass, they would not use a BB system. if one wants to grow Acropora, then why have a substrate? i am just suggesting matching methodologies to the organisms wishing to be kept and understanding the pros and cons of each. that way the hobbyist can make informed decisions on what is more important to them and adjust for the pro's and con's to maintain the desired environment.

Health sea grass beds can be found growing immediately adjacent the healthy growing acropora. So I'm not sure why you seem to think they are such radically different environmental needs. Of course one needs the sand substrate, and the other a hard substrate, but both are bathing in waters with identical nutrient loading.


you are correct. the point i am trying to make is that we are throwing large amounts of resources at our systems in order to keep iP levels down instead of just removing the waste organic material that ultimately leads to a significant amount of dissolved inorganic nutrients.

And if folks follow your advice and remove solid waste from the substrate, what is your quantitative evidence that they will no longer need to throw large amounts of resources at the systems in order to keep iP levels down?

Very good question. On the anectodal side, having run every system out there from bare bottom to DSB, I've found found DSB with refugiums to the be easiest to maintain low nutrient levels, need the least amount of technical resources, and are the most resilient. Bare bottom requires more skimming, more filtering in general, more physical intervention of the human in charge...
 
No one keeps marine life in a sewage treatment plant, nor are many of the processing methods replicable in a reef tank. It's about as relevant to reef tank sand beds as flushing a toilet or planting a coral in a terrestrial garden.
Phosphate is sequestered and manullly removed in treatment plants Sunk phosphate is not usually removed or soluble in a reef tank in significant amounts other than by skimming out some sediment that get's pushed along .
Unconnected dots again.
 
why do you think that PSB's are not doing much work in a reef tank?

Because there is no evidence that they do .
Even in the sea excess phosphorite deposits millions of years old exist.As I noted earlier. I don't think you understand what a PSB is other than a term,another dot, that you like to toss out. Phosphate is not "always on the move". It doesn't vanish but it can be sunk and remain that way for a very long time in salt water. Reactive phosphate from degrading organics or inorganic phosphate in the water or adsorbed to calcium carbonate is not the same .

If you are now reasserting PSBs have a significant role in a reef tank ( after disowning them and saying it's dissolution by general acidification from bacterial activity you were talking about )then tell us what these bacteria are and how they work in a reef tank to solublize sunk phosphate:

Fungi or bacteria?
What species?
What rock phosphate do they use?
How do they do it?
What environments would they need in salt water : pH, organics, oxygen etc., other nutrients?
Are they obligate anaerobes, obligate aerobes,facultative?
Are they heterotrophic,photoautoptrophic, chemoautotrophic, chemlithoautotrophic?
Do they require organic material?
What enzymes do they produce and what resources do they need to do so?.

Finally, If you can prove PSBs are active in a significant way in a living reef tank,do you think they would slow down the immobilization(sinking) of phosphate as they do in soil applications when used to enhance the potency of fertilizers for terrestrial plants and crops?
 
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you are correct. the point i am trying to make is that we are throwing large amounts of resources at our systems in order to keep iP levels down instead of just removing the waste organic material that ultimately leads to a significant amount of dissolved inorganic nutrients.

And if folks follow your advice and remove solid waste from the substrate, what is your quantitative evidence that they will no longer need to throw large amounts of resources at the systems in order to keep iP levels down?

working on this, going through past TOTM and looking at maintenance and equipment usage. i thought the links to decomposition and fertilizers would point to why these dissolved iP resources are needed and how removing the waste organic material before it would have a chance to decompose would limit their need.

how do you explain how all of this dissolved iP enters the water column? the increased need for all of these resources.

The diagenesis of phosphorus in a nearshore marine sediment

I haven't seen anyone (other than yourself) imply that DSB's and refugiums simply (and magically) make nutrients just up and disappear. We have talked about nutrient recycling and nutrient removal via export such as harvesting algae that is sucking up the fertilizer, along with such things as skimmers, gfo, etc.

you did previously on page 16.

All these methods we mention are essentially the sewer processing plant...the one that gets, and deals with the effluent from that toilet that got flushed ;)

confused? which is it?


Health sea grass beds can be found growing immediately adjacent the healthy growing acropora. So I'm not sure why you seem to think they are such radically different environmental needs. Of course one needs the sand substrate, and the other a hard substrate, but both are bathing in waters with identical nutrient loading.

this is not occurring on the reefs of the corals we legally can keep.

Very good question. On the anectodal side, having run every system out there from bare bottom to DSB, I've found found DSB with refugiums to the be easiest to maintain low nutrient levels, need the least amount of technical resources, and are the most resilient. Bare bottom requires more skimming, more filtering in general, more physical intervention of the human in charge...

i of course have found the opposite if i was keeping a low dissolved iP system. just a weekly siphoning of the settling tank and daily removal of the skimmate collection container. nothing else. i have found that you have to do the maintenance at some point. you can either do a little all of the time, or do bigger events later. with my more dissolved iP systems, substrates made them easy. just a light stirring of the substrate once a year. just enough to keep the majority of waste organic material from building up.

No one keeps marine life in a sewage treatment plant, nor are many of the processing methods replicable in a reef tank. It's about as relevant to reef tank sand beds as flushing a toilet or planting a coral in a terrestrial garden.
Phosphate is sequestered and manullly removed in treatment plants Sunk phosphate is not usually removed or soluble in a reef tank in significant amounts other than by skimming out some sediment that get's pushed along .
Unconnected dots again.

how am i not connecting the dots? in a substrated system, how is P sequestered and manually removed once it gets in the substrate? a sewage treatment plant works by settling out and concentrating the waste organic material. this is going on in our systems also. it has to be in order to "feed" the benthic organisms. if it wasn't, then what are those benthic organisms eating?

why do you think that PSB's are not doing much work in a reef tank?

Because there is no evidence that they do .
Even in the sea excess phosphorite deposits millions of years old exist.As I noted earlier. I don't think you understand what a PSB is other than a term,another dot, that you like to toss out. Phosphate is not "always on the move". It doesn't vanish but it can be sunk and remain that way for a very long time in salt water. Reactive phosphate from degrading organics or inorganic phosphate in the water or adsorbed to calcium carbonate is not the same .

If you are now reasserting PSBs have a significant role in a reef tank ( after disowning them and saying it's dissolution by general acidification from bacterial activity you were talking about )then tell us what these bacteria are and how they work in a reef tank to solublize sunk phosphate:

Finally, If you can prove PSBs are active in a significant way in a living reef tank,do you think they would slow down the immobilization(sinking) of phosphate as they do in soil applications when used to enhance the potency of fertilizers for terrestrial plants and crops?

yes, they do slow down the immobilization of P. the give and take between the PSB's and the calcium carbonate helps to move P downward throughout he substrate and allow uptake of iP from the water column to the CaCO3. they also allow a better transfer of P between all of the organisms. PSB's are what is helping to drive the P cycle in our systems.

Variations in heterotrophic bacteria and phosphate solubilizing bacteria from Karangadu and Devipattinam coast, Palk Straight, Southeast coast of India.

Marine actinobacteria showing phosphate-solubilizing efficiency in Chorao Island, Goa, India.

i guess i do not understand why we find it surprising that PSB's are found in marine sediments. why would they not be? wouldn't they have to be to facilitate the release of iP from the substrate to feed higher organisms. wouldn't the fact that there are benthic organisms show that somehow iP is being utilized from the substrate structure? why would this process not be like what is found terrestrially?

i am still confused, is calcium carbonate binding or an equilibrium reaction in the pH of our systems?

i do believe there can be some dissolution going on. if the affinity for P with CaCO3 goes up with pH and we keep the pH of our systems at 8.2, and we would like to keep our iP levels close to ocean values 0.005ppm. if the levels get a lot higher than that, then i do believe that iP can be pulled from the CaCO3 media, but at lower levels wouldn't the pH push the reaction in favor of the iP binding to the CaCO3 media? isn't that how it works? the lower the pH the more easily the iP would leave the matrix. i am sure there is a dissolution reaction for this. i could not find it.

Yes. Phosphate will bind onto the outermost surface of aragonite under conditions where it wouldn't itself precipitate calcium phosphate. That binding is optimal around pH 8.4 in seawater.

Calcium phosphate, OTOH, will be driven to precipitate more and more as the pH rises to at least about pH 9.

this statement has always baffled me. is it binding or equilibrium? if it is equilibrium, then why would siphoning the substrate not release the inorganic P back into the water column.[?B}

It is a slow equilibrium with the water. If the water has elevated P, it won't ever come off. If it has low phosphate, it will slowly come off. It may not come off during the time it takes to do a vacuuming.


Calcium carbonate phosphate reaction?

Phosphate - What is it and why should you care?

---------------------------------------------------------

i guess i do not see why the marine environment would be different than the terrestrial environment. life on Earth started in the oceans. at some point PSB's had to start out in the oceans in order to keep the whole process going.

G~
 

You might want to note this paper applies to non calcerous sediments, but rather the muck and iron rich glacial sediments at the bottom of Long Island Sound. More specifically "A large proportion of dissolved phosphate in the upper ~10 cm of sediment (zone of bioturbation) is provided by the release of adsorbed phosphate during the reduction of ferric oxyhydroxides;" There is significant (ground water seepage) input of iron and bound (to the iron) into the sediments of LIS and other associated embayments of area. Quite a different set of process than occur on the reefs we're interested in.


you did previously on page 16.



confused? which is it?

If you think the methods we've been talking about = magic removal, no wonder your confused.


this is not occurring on the reefs of the corals we legally can keep.

You base this is on what?
 
how do you explain how all of this dissolved iP enters the water column? the increased need for all of these resources.

I've said it at least a half dozen times in this thread alone: direct excretion from organisms that eat fish food.

They pee it out!



i thought the links to decomposition and fertilizers would point to why these dissolved iP resources are needed and how removing the waste organic material before it would have a chance to decompose would limit their need.

Sure, it limits the amount of GFO needed from 2 pounds per use to 1.95 pounds per use. Not a big deal.

Those numbers are obviously made up, but the point is that I do not dismiss that it happens, I dismiss it as significant relative to direct excretion.
 
Randy,

What do think is the relationship of phosphate and beating dead horses? :D

I'm also wondering about the effects of phosphate in seawater and the powers of observation. As it seems I've hallucinated an awful lot of sea grass and acropora growing side by side over my lifetime. Must be an effect of diving in those cesspools :D
 
Randy,

What do think is the relationship of phosphate and beating dead horses? :D

I'm also wondering about the effects of phosphate in seawater and the powers of observation. As it seems I've hallucinated an awful lot of sea grass and acropora growing side by side over my lifetime. Must be an effect of diving in those cesspools :D

Not to mention all those sand areas around every reef and bomie I hallucinated around every reef and bomie in every single dive I did on the GBR.
 
how do you explain how all of this dissolved iP enters the water column? the increased need for all of these resources.

I've said it at least a half dozen times in this thread alone: direct excretion from organisms that eat fish food.

They pee it out!

AND WHAT ABOUT THE POO OR DEAD ORGANISMS!!

i am well aware of the pee, but i am also well aware of the poo. i am also aware of normal life cycles of organisms and of the bacterial biomass. do you just get organisms that do not poo or die?

i thought the links to decomposition and fertilizers would point to why these dissolved iP resources are needed and how removing the waste organic material before it would have a chance to decompose would limit their need.

Sure, it limits the amount of GFO needed from 2 pounds per use to 1.95 pounds per use. Not a big deal.

Those numbers are obviously made up, but the point is that I do not dismiss that it happens, I dismiss it as significant relative to direct excretion.

what numbers do you have that allows you to dismiss it as insignificant when that dead horse we keep beating dies, or maybe is "mostly dead" and poos? what numbers do you have that suggest that solid waste organic material is an insignificant way for animal life to expel nutrients, or how dead organisms as they decompose only release an insignificant amount of their material back into the system? do you dismiss that solid animal waste is fertilizer for algae and plants?

take any substrate older than a few months. stir it up. what do you see? what is all of that material stirred up? where did it come from? it wan't there when you put the substrate in. what is all of that material that builds up in an empty areas of a sump or in the bottom of a skimmer? is this not solid waste organic material produced by the organisms in the system? is it not poo, is it not left over food, is it not bacterial flock, is it not dead organisms? how is this not decomposing? more magic? maybe none of the benthic organisms in your systems die.

what happens to all of this material? if what you say is true and it gets consumed indefinitely by other organisms, then why is it even in the substrate? wouldn't all of the organisms in the system use it all up? are you suggesting that all of the organisms in our systems have their mouths up the butt of the previous organism? zero available food. wouldn't that make it difficult for an increase in population of any organism? what would the new organisms eat if the waste products from the previous organism is already going directly into the following organism with zero waste? wouldn't more and more organisms mean more and more solid waste organic material being produced?

phosphorus does not off gas. if skimming, GFO, resins... whatever, is removing all P, then what is building up in the substrate, more pixie dust? i thought these devices were getting rid of all of the P.

is detritus (solid waste organic material) just a figment of everyones imagination?

G~
 
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take any substrate older than a few months. stir it up. what do you see? what is all of that material stirred up? where did it come from? it wan't there when you put the substrate in. what is all of that material that builds up in an empty areas of a sump or in the bottom of a skimmer? is this not solid waste organic material produced by the organisms in the system? is it not poo, is it not left over food, is it not bacterial flock, is it not dead organisms? how is this not decomposing? more magic? maybe none of the benthic organisms in your systems die.

what happens to all of this material? if what you say is true and it gets consumed indefinitely by other organisms, then why is it even in the substrate? wouldn't all of the organisms in the system use it all up? are you suggesting that all of the organisms in our systems have their mouths up the butt of the previous organism? zero available food. wouldn't that make it difficult for an increase in population of any organism? what would the new organisms eat if the waste products from the previous organism is already going directly into the following organism with zero waste? wouldn't more and more organisms mean more and more solid waste organic material being produced?

phosphorus does not off gas. if skimming, GFO, resins... whatever, is removing all P, then what is building up in the substrate, more pixie dust? i thought these devices were getting rid of all of the P.

is detritus (solid waste organic material) just a figment of everyones imagination?

G~

How can you assume it's reactive?

Or even organic for that matter?

For all we know a lot of those particulates could be mineral precipitates, bits of sediment or rock that were eroded off, etc; that's what the vast, vast majority of marine sediments are. As far as I know, there is absolutely zero analysis of the makeup of the particles that build up, so we can't really rule out the possibility that it isn't organic.

If it actually is organic, the very fact that it's still there after all this time is pretty strong evidence that it is difficult or even impossible for the organisms in the tank to use that "muck". Useable organic material is scavenged very effectively and quickly except under the most extreme cases (heavy sedimentation etc.) that don't take place in an aquarium. Eventually, after being recycled over and over, all the usable organic material is stripped out, and what's left is essentially inert and unusable to all but very select and specialized microbes. Marine sediments in nature are full of such highly-processed refractory compounds that essentially are never used, but this represents a tiny fraction of the organic material that moves through the system. We don't know this for sure, but I'd be willing to wager (and in a sense do wager my systems' health) on those particulates being the unwanted and unusable leftovers produced by a healthy ecosystem. Waste, after all, constitutes what an organism cannot use, so eventually so much is stripped out that all that's left is functionally inert.

Organic matter consumption takes place over the course of MINUTES in a healthy system, breaking it down into the soluble components that can either re-enter the food chain or be removed through our variety of filtering mechanisms. What's left after that process is what accumulates. Does it contain organic carbon, nitrogen, and phosphorus? Almost certainly yes, but it almost equally certainly exists in practically unusable forms. Based on that, I would even argue that focusing on removing detritus is going to miss most of the reactive material unless it's removed from the system on at least a daily basis; otherwise you're focusing on removing something that - from the perspective of the food web - was already removed.
 
what numbers do you have that allows you to dismiss it as insignificant when that dead horse we keep beating dies,

I take dead fish out of the tank. If you do not, perhaps that is why you need to vacuum the substrate.

I am, as it happens, an expert on phosphate metabolism. I've studied it for more than 20 years, and have invented products that sell more than a billion dollars worth each year correcting hyperphosphatemia in people.

There is a flow chart in this link which shows the relative excretion of phosphate in urine (which is almost totally inorganic phosphate) and in feces (which is a combination of organic and inorganic phosphate).

https://www.inkling.com/read/medica...-2nd/chapter-52/calcium-and-phosphate-balance

The inorganic phosphate in urine excretion dominates, even if you ignore all of the inorganic phosphate in the feces. Then you seem to assume that all of that feces ends up in the substrate, which is utterly untrue. Other macroscopic creatures eat it, sometimes over and over. I had a kole tang that loved to eat my yellow tangs feces as fast as it came out. That drops the original phosphate ending up in feces by another factor of, say, based on the data above, three. Each cycle drops it significantly.

At the end of the day, yes, there obviously is phosphate making it to the substrate (as I've agreed along), but it is not the dominant player in phosphate balance in a reef tank.
 
this is not occurring on the reefs of the corals we legally can keep.

Regarding seagrasses, why do you think this is the case? You'll find areas with seagrass along patch reefs and lagoons in the Indo-Pacific, all of which are inhabited by Acropora to varying degrees. Some species of seagrass are almost always associated with and adjacent to coral reefs and intense water movement.
 
why do you think that PSB's are not doing much work in a reef tank? "cooking" LR shows that they are doing a significant amount of work in the system. all of that detritus building up while cooking is a visual indication that iP is being pulled from the calcium carbonate matrix. we know the cooking is done when the detrital accumulation stops. G~

as long as it is in solid form it can be removed. once removed it is not in play. if it is hiding in the substrate it is always in play. it takes time for decomposition to take place. it is not instantaneous. siphoning once a week will do wonders. you do not need to siphon every day. this is where the skimmer earns it keep. it is the only piece of equipment we use that actually exports P continuously. it makes sense to have the skimmer do as much as it can. have it see as much of the tank water as possible. G~

I've put these two statements together because they illustrate what I'm seeing as the disconnect here. Now, I can't say this for sure because as Amphiprion pointed out, no one's tested that stuff to see if it's even organic, but I've paid very close attention in my tank to where detritus builds up, where it seems to come from, and what happens to it over time. Everything I've seen has lead me to believe that that greyish crap that collects on the bottom of bare tanks, and in sumps and overflows is not material waiting to be broken down, but is actually produced by bacteria, and is what is left over after every possible usable atom has been removed. I've had a clump of the stuff in the first chamber of my sump for over 2 years. When I don't run filter socks, it grows a bit. When I do run filter socks (which is most of the time), it stays roughly the same size. That stuff also accumulates in the chamber I do water changes out of, which most of the time is downstream of a heavy duty filter sock and a protein skimmer. Not a piece of uneaten food has ever so much as entered that chamber, and yet a fine dusting of detritus will develop on the bottom between every water change. Bacteria, while small, are physical objects. Many hundreds of billions of bacteria can form biofilms. When bacteria in a biofilm die, usable molecules of their cells are used by the rest of the bacteria in the film, but bacteria, like all living things animals, produce waste that is not usable. I propose that this waste and the detritus you're talking about are one and the same. Bacteria make it, and you only see it when everything that could possibly be removed and reutilized is already taken out to the point where not even bacteria can break it down any more. I think it's a good idea to get it out for a bunch of different reasons, but saying that removing detritus will reduce the total amount of phosphate you'll need to deal with through other means, to me, sounds like saying you can keep the noise at a house party down by cleaning up the mess once the party is over. The noise was already made, and the phosphate was already released and and consumed.

Arguably either one of us could be proven wrong by a simple analysis of the detritus in the bottom of a tank. If it is the unusable waste product of bacterial metabolism and inorganic precipitates, your assertion that it is material waiting to be decomposed and therefore a potential source of phosphate is patently wrong. If it is undecomposed food and fish waste, I will eat my words an apologize.

you are correct. the point i am trying to make is that we are throwing large amounts of resources at our systems in order to keep iP levels down instead of just removing the waste organic material that ultimately leads to a significant amount of dissolved inorganic nutrients. we use GFO, algae, resins, carbon dosing to cover up the affects of the decomposition of the waste organic material. hoping to remove the iP from the water column at a rate that matches the dissolved iP of the environment we are trying to replicate. all of these are resources that would not need to be as necessary if the waste organic material was removed before it has a chance to decompose. yes iP is testable and gives us something to chase, but just looking to see the amount of biomass in the system can also tell you the amount of waste oP that is being produced and ultimately able to become dissolve iP.

No, we add resins, algae, skimmers, and carbon dosing to keep up with the rate we add nutrients to feed fish which are contained in volumes of water many trillions times smaller than the ocean. If you were to work out how many pounds of fish there are per gallons of water in the ocean, you'd probably find even the largest public aquarium is weighted several dozen orders of magnitude in favour of fish. Using algae, or resins, or GFO, or huge water changes, or excessive skimming, or sand beds or whatever, aren't "covering up" anything other than the fact that even 1 medium sized fish in an average aquarium will require enough food to rapidly turn that tank in to an uninhabitable slew without some system in place to deal with it's waste. Whether you have a tank with a sand bed or no sand bed, a fish will contribute inorganic nutrients to the water just through the act of exchanging materials across it's gills, at a rate vastly higher than can be "naturally" recycled or consumed in a small glass box. Hence water changes, live rock, skimmers, resins, carbon dosing, refugiums, deep sand beds, and in most cases, some combinations of many of those. Removing the sand bed will not change that, nor will it prevent decomposition from taking place in a million different nooks, crannies, and pore spaces in your rocks, nor will it make the amount of food your fish requires to survive go down.

You will have to add large quantities of phosphate every single day no matter what your system looks like to keep your animals alive, and running a BB tank will not magically make that problem go away, nor will it prevent phosphate from accumulating in the system and eventually the water column unless you put some system in place to deal with it. There are hundreds, probably thousands of people who run BB tanks and still require the use of GFO to keep phosphate levels acceptable for a reef. Perhaps your tank is able to maintain reasonable phosphate levels just through skimming and water changes alone, but such dynamics are highly dependent on a large number of factors that are specific to the way your system is set up in general, not just your lack of a sand bed.

You want less nutrients? Have less fish, or stop feeding the ones you have.

a BB dam would require less resources to hold back the water to maintain the desired water flow. :D the dam would not need to be made as strong, the valves holding back the water would not have to be as large. these are all resources (cost/maintenance).

And foregoing the aesthetics of a sand bed while requiring more frequent water changes and manual cleaning of the bottom of your tank are not a cost incurred? Keeping with the analogy, what you save on damn construction costs you pay for in less available drinking water and reduced electrical output. There are trade-offs to every decision, but in this case you're saying that the trade-off for having a sand bed will be more difficulty maintaining low nutrients in the system over time, when there are literally thousands of people on this forum who are living testaments to the opposite.

it is important to know which type of reef someone is trying to emulate. the dissolved inorganic nutrient poor outer reef or the higher dissolved inorganic nutrient inner reefs. we need to setup our systems to match our must have organisms. why are we all told to setup our systems the same, when the organisms we keep can come from very different environments?

can we recreate the reefs even better if we would stop trying to setup all of our recreated reefs the same and start paying more attention to the environment that the organisms come from? if one wanted to grow sea grass, they would not use a BB system. if one wants to grow Acropora, then why have a substrate? i am just suggesting matching methodologies to the organisms wishing to be kept and understanding the pros and cons of each. that way the hobbyist can make informed decisions on what is more important to them and adjust for the pro's and con's to maintain the desired environment.

I have spent many hundreds of hours diving and snorkelling, from the Caribbean to Australia. One of my favourite places was Utila, off the coast of Honduras. I stayed at a hotel/dive outfit for two weeks with this amazing jetty that went about 100 feet out in the water. They built it because a solid wall of stag horn acropora about 20 feet from shore prevented you from accessing the 'outer' reef in anything but the highest tide, and even then your risked getting shredded. In low tide you could snorkel out from the beach to what looked like an artist's imagined rendering of the briar patch in coral, rising abruptly from glittering white sand in about 10 feet of water. The outer reef on the other hand, was dominated by massive sponges, tunicates, sea fans, and building size formations of porites, with nary an Acropora to be found.

Acropora grows where there is access to light, suitable substrate, the correct temperatures, and they don't get routinely pounded to bits by hurricanes. They can grow in the inner reef or the outer reef, and are adaptable to a wide range of depths. To make an 'inner' and 'outer' reef distinction is simplifying it beyond the point of being useful, as is saying that 'inner' reefs defacto have higher dissolved nutrients (they can, but being 'inner' is only part of the equation), or that tanks with sand beds are somehow a facsimile of said system just because of the sand bed.

agreed. i have been using the terms to denote the amount of dissolved inorganic nutrients available in the water column. i will be more specific from now on. it does lead to confusion.

But countless people with sand beds permanently maintain low dissolved nutrients in the water column...
 
Here's a paper that studied the release of phosphate from a fish on a coral reef.

http://m.aslo.net/lo/toc/vol_30/issue_1/0146.pdf

It shows that for these fish, the production each day was

1.49 + 0.45 pmol g-l d-l for MRP (a measure of dissolved inorganic phosphate)
2.01 + 0.34 for TDP, (a measure of dissolved inorganic and organic phosphate)
4.54 t- 2.30 for particulate P. (includes both inorganic and organic phosphate that is stuck to a particle somehow)

They also show that fecal pellets lost 55%of their phosphate by leaching inorganic phosphate within 24 h, and before significant bacterial growth had taken place in the pellet. The pellets were then stable for 5 days until bacterial growth began to become significant.

So of the phosphate released by these fish each day, only 31% remained in their feces after 24 h. :)
 
Over the years, I have observed distinctly different types of detritus depending on where it is collected in my tanks. The detritus in my bare back chambers tends to be very fine, grey in color and has no distinct, discernible odor, whereas detritus from under my live rock is dark brown and 'fluffier' (for lack of a better term). I've also noticed that this 'under the rock detritus', when siphoned out, has a distinctly unpleasant odor which is likely due to at least some hydrogen sulfide production. I only remove this type of detritus every 2-3 months, so if it only takes a 'short time' for food particles to be reduced to relatively inert and unusable material, how do we explain the hydrogen sulfide waste products produced as a by-product of bacteria consuming quantities of organics over longer periods of time?
 
Over the years, I have observed distinctly different types of detritus depending on where it is collected in my tanks. The detritus in my bare back chambers tends to be very fine, grey in color and has no distinct, discernible odor, whereas detritus from under my live rock is dark brown and 'fluffier' (for lack of a better term). I've also noticed that this 'under the rock detritus', when siphoned out, has a distinctly unpleasant odor which is likely due to at least some hydrogen sulfide production. I only remove this type of detritus every 2-3 months, so if it only takes a 'short time' for food particles to be reduced to relatively inert and unusable material, how do we explain the hydrogen sulfide waste products produced as a by-product of bacteria consuming quantities of organics over longer periods of time?

There are a few possible explanations for this, and I want to say first and foremost that sulfide in the reef aquarium gets tricky because its presence in anything other than completely anoxic sediments with high carbon loading is not predicted by our understanding of what goes on in marine sediments. Typically, what little is produced under "normal" conditions is rapidly oxidized either biotically or abiotically back to sulfate. One possible explanation for that is that the "smelly" compounds are not actually sulfides, or at least that they are a mixture of a variety of sulfur compounds including some, such as e.g. iron sulfides, that are not reactive (but still do smell). Also keep in mind that the natural detection limit for the sulfide smell is incredibly small, so even a very smelly sediment likely represents a tiny amount (in the parts per billion) of sulfides.

But that doesn't really answer the question, and of course there a few possible answers unless we know a lot more about the specific makeup of and source of the detritus in question. The simplest answer is one of coincidence, and that the bacteria producing the sulfide are living on (or maybe even make up) the detritus and the detritus itself is inert. Honestly, though, I doubt it's that simple. Sulfate reduction - compared to other methods of OM breakdown - is indeed a very slow process (it has very very low free energy yield as a reaction)...it can take months for the organic matter necessary to reach the completely anoxic zone and then get broken down. And by the time it gets there it has been heavily scavenged so that for most purposes it is indeed inert except for the "eke out a living" bacteria like sulfur reducing ones. So, it is entirely possible that the slow-accumulating detritus you're talking about is indeed related to SRB; but to put that in context of phosphate, as we were discussing, sulfide is produced at a 50:1 ratio to phosphate through this pathway. So it's possible that your observation is relevant to the issue of sulfides over very long time scales, but in terms of phosphates still represents largely inert sediments.

That said, there is also one other possible explanation, this one again speculative due to our lack of knowledge on *what* the brown detritus actually is. In the field, such brown sediments are usually used as a sign for most commonly iron oxides, which could be forming via reduced iron (which is produced before sulfide unless no iron is available) reacting with oxygen, forming the distinctly brown stuff. This is a potentially important observation for two reasons. 1) the iron oxides themselves are electron receptors, not the organic matter, so in terms of phosphate production they are indeed inert (in the same sense that we can consider oxygen inert because it does not break down to produce anything) because they need the OM to react with. Reduced iron also reacts with sulfides to form insoluble iron sulfides, and so there could be trace amounts of sulfides associated with them that could be responsible for the smell.

Let me say again that this is all speculative unless we know more about the particular makeup of the detritus, though it's certainly an important observation to consider.
 
Very interesting possibilities and I appreciate the detailed feedback.

Focusing on phosphate, if we assume that most detritus in an aquarium is relatively inert, I wonder how much of the detrital material per volume is bacterial, thus containing phosphate? If substantial, then removal of this material could be a significant phosphate removal pathway. Also, could phosphate be 'locked up' in the detritus as a specific species or chemically bound to another compound(s) in such a way that it is not readily accessible to other organisms?

All this is of great interest to me in understanding how my 'natural' system functions. I use frequent water changes plus shallow sand bed substrate vacuuming in a relatively high bioload to water volume ratio aquarium without any mechanical or chemical filtration. Six years on and the system is still going strong with undetectable NO3 and PO4 (Salifert).
 
Focusing on phosphate, if we assume that most detritus in an aquarium is relatively inert, I wonder how much of the detrital material per volume is bacterial, thus containing phosphate? If substantial, then removal of this material could be a significant phosphate removal pathway. Also, could phosphate be 'locked up' in the detritus as a specific species or chemically bound to another compound(s) in such a way that it is not readily accessible to other organisms?

It absolutely could if it is indeed bacterial cells, though of course that's a big question mark; even if it's refractory compounds rather than organisms, it still almost certainly contains P, though how much you'd remove by pulling that out relative to other removal methods is anyone's guess without some hard data. As far as the second question, Randy certainly could give you a better answer as far as the specific chemistry of phosphates binding to other minerals, but on a broader scale of organic matter in sediments, one of the really interesting "hot topics" in the field right now is the idea of "protection" (for lack of a better term) of organic molecules. According to this theory, organic molecules that would otherwise be labile and rapidly used are protected within the abiotic structure of the sediment (think of a small organic molecule stuck in a deep crevice of the crystalline structure that no microbe can fit in). If that actually happens in nature (and that's an "if" right now, though it is a plausible idea and there is some evidence supporting it), then there's no reason that couldn't function the same way in the aquarium and act as a natural sequestration for later removal or a sink in and of itself. It's also a lot more likely with crystalline sediments like carbonate than with clays etc that tend to be rounder at the ultra-microscopic level, so that's a very real but unexplored fate for P.
 
The reason I suggesting bacteria attached to the detritus in relation to phosphate was the oft quoted observation that stirring up detritus on a daily basis could help to feed non-photosynthetic and most photosynthetic corals, too. This implies that there must be a fairly substantial quantity of organisms attached to detrital material in order to provide sustenance to corals if we assume that the material itself is relatively inert.

Regarding 'Protection' of organic molecules, if this theory is correct then sequestration of phosphate molecules could take place within detrital deposits, too, especially those that are a product of the mineralization process. Removal of this detritus would remove phosphate from the system before it has a chance to be 'liberated' by any number of mechanisms (locally low pH, PSBs, etc.).
 
The reason I suggesting bacteria attached to the detritus in relation to phosphate was the oft quoted observation that stirring up detritus on a daily basis could help to feed non-photosynthetic and most photosynthetic corals, too. This implies that there must be a fairly substantial quantity of organisms attached to detrital material in order to provide sustenance to corals if we assume that the material itself is relatively inert.

Regarding 'Protection' of organic molecules, if this theory is correct then sequestration of phosphate molecules could take place within detrital deposits, too, especially those that are a product of the mineralization process. Removal of this detritus would remove phosphate from the system before it has a chance to be 'liberated' by any number of mechanisms.

The first observation about detritus feeding corals is getting somewhat out of my field of expertise, but there is research suggesting that fish derived detritus (fish poop) meets coral nutritional needs in the wild. So there's definitely something there as far as fresh detritus. It's worth pointing out though that such fresh detritus is chemically very different from what accumulates long term.

As far as the second point, that's absolutely correct, but it's an open question how large that portion is and whether it would ever be released eventually. In a tank set up to maximize particulate P removal that's certainly a viable method of getting some out, though I still personally think the amount sequestered in detritus older than a few days is small compared to other pools, but again that's just a hypothesis based on how things work in the wild system I study.
 
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