GoSlugsGo
Unfortunately, the AC Jr. only comes with one pH probe. Unlike it's big brother (AC III) which can have two if you eliminate the ORP probe or add the expansion unit.
Incase you don't know, having a pH probe in the calcium reactor attached to a tank tells you almost nothing about the pH of the tank.
So, you have to decide if you are willing to sacrafice displaying the tank pH on your AC Jr. so you can control the pH of your reactor.
An alternative is to fix the CO2 bubble rate into the reactor and adjust the calcium reactor effluent drip rate into the tank to control alkalinity. Unfortunately, even the best CO2 needle valves are extremely unreliable. In other words, it is darn near impossible to get a steady CO2 bubble rate so you have to fiddle with it a lot.
FWIW - I have an AC standard. I opted to sacrafice the tank pH display so I could control the strength of the calcium reactor effluent. This, in turn, allowed me to control the alkalinity of the tank.
The other nice thing about this approach is that your AC Jr. can be programmed to sound an alarm if the pH in the reactor drops below the programmed min or climbs above the programmed max. This will happen when the C02 cylinder is empty. It also happens if the C02 valve sticks shut. Or, if the CO2 valve sticks open.