Ok, so if you are feeding your skimmer with the overflow like I am, then the air bubbles, assuming no small leaks, would be coming from your tanks overflow. What kind of overflow do you have? Do you hear gurgling at the tank level as the water and air go into the overflow? Even with the durso in my overflow, I initially got bubbles going into the skimmer as well but after a few days they subsided. How long has yours been running?