There are new features upcoming in Fusion that will help do all that. It's call 'Tasks' which is a wizard that will run you step by step in setting up various setups like heater,return,ato etc.
I suggest you ask in the Neptune forum (on their website, not here) for help in programming.
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I have been, but it's still a work in progress.
And when will this "Tasks" feature be released? I'd like to utilize the advanced ATO features you mentioned.