New York Reef Club Member Tank Threads

does anyone have any advice on what type of mechanical filtration I should use for a 54 gallon, I currently have a cannister system but I was told they are not the best choice for coral?
 
Here is the latest picture of my 50 breeder. I was in the middle of cleaning up and rearranging stuff.

Currently battling BJD on my euphyllia corals.
 
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