A few more questions. Please let me know if I am over simplify things. The chemical process is
5 CH3OH + 6 NO3- ----> 3 N2(gas) + 5 CO2 + 7 H2O + 6 OH-
Equation is correct, though NO3 goes thru intermediates(NO2 and N2O) before becoming N2(g)
Theoretical nitrate reduction reactions:
NO3- +3e + 2H = NO2- + H2O
then NO2- + 3e + 4H = 1/2(N2) + 2(H2O)
At the peak of the reaction there is noticeable increase in nitrite.
Yes but only during the first couple of cycles. IME, as the chamber "matures" the reactions happen simultaneously and are not easily testable
Assuming it takes exactly X amount of methanol to process the water in the reactor to 0 nitrate in Y hours. Since we do not know exact what X and Y are the following questions apply.
My general rule is 3:1 or 4:1 ratio of grams of methanol needed to process grams of nitrate. IME, this ratio is for startup and when nitrates are >10mg/L. Dont try to micro manage the dose when you get under 10mg/L.
1. What happens if there is less than X amount of methanol dosed?
The bacteria only uses the Oxygen from NO3 when the level of Oxygen in the water is low or not available. During the first 3/4 of the cycle the bacteria is using up the O2 in the water. If the methanol runs out the reaction will stop. The heterotrophic bacteria will stop growing without an organic carbon source.
Will the processed water simply have slightly higher than 0 nitrate?
Depending on when/where in the cycle it ran out of methanol, yes. If you WAY underdose you might end up with MORE nitrates. IME the reaction happens at different speeds and not all at once for the whole chamber. That is why good circulation is important to keep the reaction going.
2. What happens if there is more than X amount of methanol dosed? Will this be flushing into the DT and end up accumulating in the DT?
If you have excess Methanol that is not used before you flush, it will end up in the rest of your system. If it is a small amount it will just feed the heterotrophic bacteria that is growing in your system. It will not accumulate, it will get eaten. We all have areas where there are pockets of low oxygen where this bacteria grows IE: between rocks, inside piping, in your sand...etc
How would we know when this happens?
If too much methanol gets released you could experience a bacterial bloom in your DT (cloudy water is a sign of bacterial bloom)
3. If the reaction is completed less than Y will the bacteria die due to lack of carbon source?
Theoretically, some of heterotrophic bacteria will go dormant for a while if there is not enough food. Die off should not be an issue. Heterotrophic bacteria grow VERY fast; doubling is measured in minutes to hours. Conversely, autotrophic bacteria grow slow; usually measured in days to weeks.(autotrophic bacteria is usually the limiting factor in starting up a new fish tank) Eventually, once the NO3 reaction is complete, the bacteria will change to using SO4 for a source of electrons once the O2 and NO3 are used up. IME, it takes a LONG time to switch to sulfur. Also, dosing strontium Nitrate to the chamber helps prevent this.
For example, can I get a bigger reactor and flush only once per day?
Unless you have a large system I wouldnt advise a huge reaction chamber. IMO, you should aim for a chamber that, when flushed 3 times a day, removes nitrates from approx 10-20% water volume. Also, when you flush, you are dumping water filled with this bacteria into your system. While this bacteria is GREAT for SPS, LPS, sponges and other filter feeders, it is WAY more than they can use/eat. A lot of the excess will get removed with a good protein skimmer. Beyond that, it will just die off and create more waste.
4. What if the reaction is not completed when the reactor is flushed? Will the nitrite enough problem in the DT?
Again, I've only been able to test positively for these intermediates when the chamber is new. IMO, as it builds up bacteria these reactions happen quicker and more simultaneously. I have not seen where Nitrite has been a problem. After a few months you should notice the build up of N2 gas bubbles in the chamber, this is normal and expected. Also, this is why it is best to flush the chamber ABOVE the water line (to help gas off the N2)
5. Is there a concern that the bacteria will clog the overflow? I am think whether I should have two overflow drains.
I've never seen it happen but, YES, it is possible. You will get a build up of excess bacteria and it is very thick and slimy! It will also accumulate brown globs of "biomass" over time.
My setup:
200gal system
a 10gal acrylic chamber (approx 20"x8"x24")
Internal pump is WP10 at highest setting for good internal circulation
a pvc 1/2" pipe for flushing - powered by a maxijet 1200
PVC 1" pipe for the output with overflow box to help the drain and prevent clogging
You be gravity draining/flushing the chamber so make sure your output piping is large enough to accommodate the flow of your flushing pump.