I have a bean without Ts.
I first went with the traditional bean design (first pic), with the T and the threaded caps, but in order to keep the plumbing from sticking out above the overflow, the water level was so low in the overflow it made a lot of noise when water fell over the overflow. Kind of defeated the purpose of a bean. So, I modified my setup to use elbows instead of the T and caps (second pic). The main reason for threaded caps on the bean is to allow for easy servicing. I can just as easily pull the entire stand pipe out of the bulkhead if I need to service it, I didn't cement them in and they still work great; even the siphon.
rrasco, Nice before and after pictures of your bean drain! It's good to see others like yourself going the low profile route and doing it successfully. I get what you are saying about lowering the drain too far down into your weir housing. It's going to be 90 degree elbows for me as well.
With that, I'm just about ready to put in my order for a new custom starphire shallow reef tank by Tom at glasscages.com. I swear, designing and planning a tank is 3/4 the fun!
:beer: