Due to the restricted flow from one section to the next, the overflow box will NOT function as a single body of water, and therefore the BA drain system will not function properly. Due to the intimate interaction between the siphon, and the open channel, the entire overflow box must be a single body of water. E.G. the overflow box must function as if the baffles (supports) were not present, i.e. no friction losses. Channels, and moving under a baffle, also present friction loss, not just pipes. Since there are "baffles," the overflow cannot function as a single body of water, rather three connected or "related" bodies of water, just as a three section sump.
To echo what has already been hinted at, you won't be able to run the elbows turned up, for the reasons stated; the waterfall into the overflow will be quite high, as the water level in the overflow needs to be right around the tops of the down-turned elbows, or a bit less, so silence is pretty much out of the question, unless a very low flow rate is used. Sorta defeats the whole purpose of high performance drain systems.
Of course one could chop out the baffles, making the overflow one body of water, but seeing it is acrylic, it will be quite a mess. The next step would be to plug the existing holes, and raise them up to a more reasonable height. But, there will be the presence of a large reservoir of dead water in the over-sized box.
I am not sure of the thought process that lead to the construction of such an overflow, nor the placement of the holes. Appears that someone was thinking of an "All-in-one" methodology, which did not work out so good. The person responsible did not do you any favors, and the tank was not such a good deal as it is currently configured. I am a proponent of "learn first, before you buy," unfortunately, it rarely works that way. The advice, albeit late, would have been pass, unless the seller pays you to haul it away...